PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 328aa    MW: 37099 Da    PI: 6.728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12191216126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_004494406.1 191 YQPDICKDYKETGYCGYGDSCKFMHD 216
                     67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9189221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878190218IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7190217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12191221IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10191216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.8E-13260310IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.28E-12268311No hitNo description
PfamPF139202.3E-8268310No hitNo description
CDDcd001622.96E-7269310No hitNo description
SMARTSM001848.2E-4269306IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.262269307IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDSEAKSAE NQQSAQVCSF FRKPVNKKNI RKRTVDNEDN EDDSNSESSL MHVQKKTTKS  60
DNKLFFSSGS SKSFASAEQN EESEKPVFHF ESSKEIQVSH DSKATATLET ETDFSKDARA  120
IRERALKQAS ESLKGKTTGS EDKKLYKGVN SYTDYKAGFR REQTIASEKA GGSHGPLRAS  180
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKMR  240
LAAGEGAEEE GTNLNDDDSD DEDSLPFACF ICRNPFVDPV ATKCKHYFCE HCALKHHAKN  300
KKCFVCNQPT LGIFNVAHEI RKKMAEDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A1e-202653241473Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453290.0AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494406.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_004494407.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-166C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A072U5020.0A0A072U502_MEDTR; RING zinc finger protein, putative
STRINGGLYMA03G02920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-150C3H family protein